With this menu, the a mechanism stored as a set of files on the server can be examined. These generated mechanisms can either be an individual generated submechanism (generated with a seed and pathway pair) or a complete combined mechanism (but not including the base mechanism).
A mechanism consists of three files: By pressing the 'Remote Mechanism From File' button, the files in the mechanisms/generated directory on the server appear and a single mechanism can be selected. Upon selection, two windows appear, one with a graphical display of the submechanism, a tree structure, and the second with the rate constants.
In hierarchy table, listing the reaction patterns, the reactions and the molecules, double clicking on the field will display the respective object.
In the tree diagram, moving over the element will display its name. Several buttons are provided to make the viewing easier and more interpretable. Basically, the tree consists of alternating levels, molecules and then reactions (or reaction classes). The 'Reaction Classes' and the 'Reaction' tabs (at the bottom) can view the tree in terms of reaction classes or in terms of individual reactions, respectively. The 'Legend' button displays the color coding.